Change the default alignment reference
- In the Data tab, click Completed Runs & Reports.
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Use either Table View or List View, then find the run of interest.
For help finding an individual run, see Search for a run report.
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In the row of the run that you want to reanalyze, click
(Actions) > Reanalyze.
- In the next screen, click Reference & Barcoding.
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Click Edit Run Plan, change any settings as appropriate, then click either Update Run or Update Run & Reanalyze.
For more information, see Create a custom configuration for the variantCaller plugin and Run the variantCaller plugin manually.