About run reports

For runs completed on a Ion Proton™, Ion S5™, Ion S5™ XL, or Ion GeneStudio™ S5 Series system, each run report includes one full chip report and one thumbnail report. If the run has been reanalyzed, additional reports are available when you open the run report. If the run was completed on an Ion PGM™ System, only a full chip report is available.

You can complete several tasks from the run report, including:

• Upload output files from the run report to Ion Reporter™ Software. For more information, see Run the IonReporterUploader plugin manually.

• Review, edit, or copy the Planned Run settings for the sequencing run. For more information, see Review Planned Run settings and Create a custom Planned Run template.

• Rerun the data analysis for the run. For more information, see Reanalyze a run.

• Archive, edit, or delete data for the run. For more information, see Data management.

• Toggle between different run reports for the same sample. For more information, see Open a run report.

• Run Torrent Suite™ Software plugins. For more information, see Run a plugin manually from the sequencing run report.

• Download the run report or plugin summary in PDF format. For more information, see Download a run report summary PDF and Download a plugin report PDF.

For further details about how to evaluate a run, see How to assess an Ion S5™/Ion GeneStudio™ S5 sequencing run report User Bulletin, (Pub. No. MAN0017983).