Definitions

This section defines terms used in the plugin output.

• Coverage Depth—The minimum and maximum number of reads covering bases in the transcript. If coverage is 100%, the minimum value is >0.

• Coverage—The number of base positions covered by at least one read.

• Start Sites—The number of base positions that are the start site for a read.

• Unique Start Sites—The number of start sites that have only one read starting at the site.

• Coverage CV—The coefficient of variation for coverage = average coverage / stddev coverage for the entire transcript.