molecular Coverage Analysis plugin configuration

Reference Genome

The reference genome selected in the Planned Run.

Library Type

The library type selected in the Planned Run.

Targeted Regions

Select the appropriate target region for this run.

The targeted regions are selected in the Planned Run, and can be changed only after the run is complete if the plugin is run manually. Target regions can be overwritten by the specific barcode targets.

Barcode-specific Targets

Select this checkbox to assign specific target region files to individual barcodes. This option is available only when the plugin is run manually.

1. Select a specific barcode.

2. Select the specific Target Regions file to associate with the selected barcode.

3. Click Add.

4. Repeat above steps to associate additional barcodes with specific Target Region files.

Alternatively, you can copy and paste the barcode/target file pairs manually.

When the Barcode-specific Targets option is deselected, all barcodes use the targets specified by the target regions, even if barcode-specific targets are listed.

Parameter file

Click to load the external parameter file that pertains to this plugin.