Planned Run templates for specific research applications
Torrent Suite™ Software is preloaded with many Planned Run templates that contain predefined settings for common sequencing applications. These system-installed Planned Run templates are categorized into research applications that describe the sequencing techniques, or specialized products, for which each system Planned Run template is used.
If a preinstalled Planned Run template does not meet your needs, you can download a template from AmpliSeq.com, or you can create your own unique Planned Run template. Custom templates are for advanced users. For assistance, contact your local Field Service Engineer.
Planned Run templates are available for use on the Plan tab under Templates. On this screen, the following categories of research applications filter the list of Planned Run templates that are available for use. Templates may be available in multiple research application category.
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Research application |
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Ion AmpliSeq™ research applications (DNA and exome), including the Ion AmpliSeq™ On‑Demand Panels, and Ion AmpliSeq™ Made-to-Order and Community Panels. |
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Ion AmpliSeq™ research applications (RNA), including the Oncomine™ Immune Response Research Assay. |
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Ion AmpliSeq™ research applications such as Oncomine® Focus Fusions, Oncomine® Focus DNA & Fusions, Colon and Lung Research Panel v2. |
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Research applications that do not fit in the other categories. Use this research application to provide all of the choices for the experiment. The choices are not restricted based on a common application workflow. |
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Ion AmpliSeq™ Inherited Disease Panel and Oncomine™ BRCA research panels. |
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All blood-related oncology research applications. For example, Oncomine™ Myeloid Research Assay. |
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All ImmunoOncology research applications. For example, Oncomine™ Immune Response Research Assay. |
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Liquid biopsy oncology research assays. |
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Solid tumor oncology research assays. |
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Ion AmpliSeq™ Pharmacogenomics Research Panel that is imported from AmpliSeq.com. |
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RNA sequencing research assays. |
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TargetSeq™ research applications, with parameters optimized for hybridization-based target enrichment. |
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Whole genome sequencing research applications, such as Ion ReproSeq™ Aneuploidy, which do not assume enrichment and do not require a target regions file. |
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