smallRNA plugin

The RNASeqAnalysis plugin can be configured with the either the hg19 reference genome or the microRNA reference when you plan a run.

Setting	Description
microRNA reference	mirbase (build 20)–Use to align against a mirBase reference, constructed from the mirBase GFF file with 10 bp padding. genome–Use to align against the whole genome.
Rescue reference	hg19

Setting

Description

microRNA reference

mirbase (build 20)–Use to align against a mirBase reference, constructed from the mirBase GFF file with 10 bp padding.

genome–Use to align against the whole genome.

Rescue reference

hg19